OmicsFormer Analysis Report

Model Information

Model Type: AdvancedMultiOmicsTransformer

Device: cpu

Analysis Summary

Attention Patterns Extracted: []

Embeddings Extracted: ['pooled']

Feature Importance Analysis: ['genomics', 'transcriptomics', 'proteomics', 'metabolomics']

Analysis Visualizations

Cll_Embeddings_Pca

Cll_Embeddings_Tsne

Cll_Embeddings_Umap

Cll_Attention_Heatmap

Cll_Cross_Modal_Correlations

Cll_Feature_Importance_Mrna

Cll_Feature_Importance_Methylation

Cll_Feature_Importance_Mutations

Cll_Feature_Importance_Drugs

Cll_Feature_Importance_Mrna

Cll_Feature_Importance_Methylation

Cll_Feature_Importance_Mutations

Cll_Feature_Importance_Drugs

Cll_Top_Biomarkers_Mrna.Csv

Cll_Top_Biomarkers_Methylation.Csv

Cll_Top_Biomarkers_Mutations.Csv

Cll_Top_Biomarkers_Drugs.Csv

Cll_Pathways_Mrna

Cll_Pathways_Methylation

Cll_Pathways_Mutations

Cll_Pathways_Drugs

Cll_Pathway_Enrichment_Mrna.Csv

Cll_Pathway_Enrichment_Methylation.Csv

Cll_Pathway_Enrichment_Mutations.Csv

Cll_Pathway_Enrichment_Drugs.Csv

Cll_Pathways_Mrna

Cll_Pathways_Methylation

Cll_Pathways_Mutations

Cll_Pathway_Enrichment_Mrna.Csv

Cll_Pathway_Enrichment_Methylation.Csv

Cll_Pathway_Enrichment_Mutations.Csv

Cll_Pathway_Enrichment_Drugs.Csv

Cll_Pathways_Mrna

Cll_Pathways_Methylation

Cll_Pathways_Mutations

Cll_Pathway_Enrichment_Mrna.Csv

Cll_Pathway_Enrichment_Methylation.Csv

Cll_Pathway_Enrichment_Mutations.Csv

Cll_Patient_Stratification

Recommendations

Use attention visualizations to understand cross-modal interactions
Analyze feature importance to identify key biomarkers
Use embedding visualizations for sample clustering analysis
Consider correlation analysis for modality relationship insights